| Package | Description |
|---|---|
| org.mathIT.genes |
Provides classes to simulate biological amino acid sequences
and to use the genetic code
|
| Class and Description |
|---|
| AminoAcid
This enum represents the 22 natural amino acids forming proteins.
|
| Codon
This enum provides the 43 = 64 DNA codons made of the alphabet
T, C, A, G; associated to each cocon is the amino acid to which it is
transformed by the genetic code during the process of genetic expression.
|
| DNA
This class represents the DNA genome of a living organism.
|
| Genome
This class represents a genome of a living organism.
|
| ORF
This class represents an ORF (open reading frame), i.e., a possible gene
(or part of a gene) of a living organism coding a particular protein.
|
| Protein
This class represents a protein as a sequence of amino acids.
|
| RNACodon
This enum provides the 43 = 64 mRNA codons made of the alphabet
U, C, A, G; associated to each cocon is the amino acid to which it is
transformed by the genetic code during the process of genetic expression.
|